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AWS S3Īwscli has been installed as a module. You can transfer data from and to Pitt box from the cluster. You can transfer data between Pitt OneDrive and the cluster. aspera binary is at ~/.aspera/connect/bin/ascp and the key is at aspera]$ ~/.aspera/connect/bin/ascp -QT -l 300m -P33001 -i ~/.aspera/connect/etc/asperaweb_id_dsa.openssh.

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You can then use aspera to download files. The NCBI recommend the use of aspera for transfer of data sets from their site.ĭownload aspera from to your home directory on HTC cluster.

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asperaĪspera is IBM's high-performance file transfer software which allows for the transfer large files and data sets with predictable, reliable and secure delivery regardless of file size or transfer distance from a location that has the aspera transfer server running. This copies the /bgfs/sam/fangping/files folder on the cluster to the current directory on the computer you issued the command. Scp -r files copies the folder files in the current directory on the computer you issued the command on to a folder on the cluster. scpįrom a terminal/shell on your computer, you will issue your SCP command.

Rsync -aP files makes a recursive copy of local directory files on the computer you issued the command on to a folder on the cluster. Logon .edu, Click Files -> Home Directory, Click Upload and choose File(s) from your computer.įor large data sets, consider using Globus - FYI: An institutional endpoint is not required to use Globus You can set up a personal endpoint on your computer if you need to transfer large amounts of data.įrom a terminal/shell on your computer, you will issue your rsync command. Your files on the server will appear in the FileZilla window.

Enter your Pitt username and password, and click QuickConnect.

FileZillaįileZilla is cross-platform FTP application available for Windows, Linux, and macOS. You can now drag-and-drop files to and from the window to upload/download files. Your files on the server will appear in the CyberDuck window.

Enter your Pitt username and password, and click Connect.

Select 'SFTP (SSH File Transfer Protocol)' from the drop-down.

Click the 'Open Connection' button on the toolbar.

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Moving Data to/from HTC cluster CyberDuckĬyberDuck is a popular open source SFTP client for Windows and Mac. There are man pages for chmod, setfacl and nfs4_setfacl. The command for bgfs is setfacl, and for ZFS is nfs4_setfacl. If you want to share file with other group members or users, submit a help ticket and we can use Access Control Lists (ACLs) – a more fine-grained control than Unix file permissions allow.

To give the group the ability to edit or change a file, add write access to the group:.Then give the group read and execute access to each file you want to share.To share files with your group, give the group read and execute access for each directory from your top-level directory down to the directory that contains the files you want to share.Access to files by the group members is governed by Unix file permissions. For detailed information on Unix file protections, see the man page for the chmod command.The group members have read + write permission to the folder. The top level folder is owned by root:groupname with 2770 permission. We created the group shared folders on /bgfs or /zfs1, /zfs2 for health science groups. You can check your home directory usage and bgfs/zfs usage. No charge for up to 5 TB of data per PI, spread between the BeeGFS and ZFS file systems. /zfs1, /zfs2, 1 PB file system for archival storage.

/bgfs, a BeeGFS file system for persistent file storage.

/ihome ($HOME), your home directory, 75 GB quota.

There are several distinct file spaces available on HTC cluster, each serving a different function.